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BL21 and beyond

Vector/host relationship

Compatibility Matrix

Troubleshooting Guide

Transform the way you think
about protein expression...in E. coli

Capabilities beyond BL21, simplicity beyond baculovirus and mammalian cell expression

BL21 and beyond

Novagen first commercialized BL21 in 1990 and it has remained the gold standard among expression hosts ever since. Being deficient in both lon and ompT proteases, BL21 and its derivatives are the most popular hosts today. Yet, a number of other Novagen host strains are available, as lDE3 lysogens for T7 promoter-driven expression, and as non-lDE3 lysogens for expression from E. coli promoters. These state-of-the-art strains are powerful tools for situations more challenging than BL21 can support, particularly the expression of mammalian proteins in E. coli. This online spotlight guide can help you select the best host strain for your protein and your application.

Factors influencing protein expression

Three factors influence protein expression:

the expression vector,
the host cell, and
the growth and induction conditions.

Changing one or more of these factors can dramatically affect expression levels and target protein solubility.


Vector-host relationship

Any number of systems may be suitable for expression of analytical amounts of some proteins for screening, yet only one combination of vector, host strain, and culture conditions may work best for other proteins, for activity assays, and for larger-scale production. To produce a high yield of active protein, set up a test matrix of vector, host, and culture conditions to empirically determine the optimal result. Optimize conditions using competent cell sets, Quarters™ Competent Cells, and QuarterPack™ Competent Cell Arrays.
Compatibility matrix

Novagen host strains are compatible with a variety of expression vectors, as long as the plasmid replicon and antibiotic resistance markers are distinct from corresponding elements carried by the host.
  
Antibiotic Resistance(s)
Host strainReplicon
Cam
Kan
Rif
Tet
contains pLysS P15A
Yes
 
 
 
contains pLacI P15A
Yes
 
 
 
Rosetta 2 P15A
Yes
 
 
 
Origami 2 F
 
 
 
Yes
Rosetta-gami 2 P15A + F
Yes
 
 
Yes
BL21none
none
NovaBlueF
 
 
 
Yes
Origami Bnone
 
Yes
 
Yes
RosettaBlueP15A + F
Yes
 
 
Yes
Rosetta-gami B P15A
Yes
Yes
 
Yes
Tunernone
none
BLRnone
 
 
 
Yes
HMS174none
 
 
Yes
 

Effect of vector/host combination on expression levels of two proteins

The indicated cell cultures were grown at 37°C to OD600 of approximately 0.8 and expression induced with 1 mM IPTG for 2.5 h. Total cell protein samples were run with the Novagen Perfect Protein™ Markers on a 4–20% gradient SDS-PAGE followed by staining with Coomassie blue. Vectors used were pET-20b(+) and pET-22b(+) for the recombinant antibody and pET-23b(+) and pET-21b(+) for p53.

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Solve complex problems using E. coli

Novagen host strains provide you with a range of technical solutions to help you avoid eukaryotic expression as well as the frustrations of obtaining aggregated protein, inactive protein or even no protein at all.
Protein expression troubleshooting guide
SymptomPossible issue SolutionSuggested host
No protein E. coli codon usage (codon bias) Supply rare tRNAs Rosetta 2
Rosetta-gami 2
Rosetta-gami B
RosettaBlue
Truncated protein
Insoluble protein Reduction of disulfide bonds Minimze disulfide bond reduction in cytoplasm Origami 2
Rosetta-gami 2
Rosetta-gami B
Too much expression Attenuate expression (titrate IPTG) Rosetta 2
Rosetta-gami B
No activity Misfolded protein Minimize disulfide bond reduction in cytoplasm Origami 2
Rosetta-gami 2
Rosetta-gami B
Attenuate expression (titrate IPTG)Rosetta 2
Rosetta-gami B
Cell death Toxic protein More stringent control over basal expression pLysS hosts
No colonies High basal expression